Cell Profiler Scripts

Cell Profiler is a freeware program that allows efficient scripting without the need to learn scripting languages. The learning curve is less steep than ImageJ/FIJI to get it working on file series.

 

Here is a script to relate distribution fluorescence of two dyes in 2D images: relate Bodipy green with Bodipy C12  (FA) lipid labeled droplets   (manuscript in prep.)